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๊ธฐ์ˆ ๋ธ”๋กœ๊ทธ 4

Small molecule kinase inhibitor ์†Œ๋ถ„์ž ํ‚ค๋‚˜์•„์ œ ์–ต์ œ์ œ, ํ‹ฐ๋กœ์‹  ํ‚ค๋‚˜์•„์ œ ์–ต์ œ์ œ

Small Molecule Kinase Inhibitor ์†Œ๋ถ„์ž ํ‚ค๋‚˜์•„์ œ ์–ต์ œ์ œ ์‹ ํ˜ธ์ „๋‹ฌ๊ฒฝ๋กœ๋ฅผ ํ‘œ์ ์œผ๋กœ ํ•ด ๋„“์€ ์˜๋ฏธ๋กœ ์‹ ํ˜ธ์ „๋‹ฌ๊ฒฝ๋กœ ์–ต์ œ์ œ๋ผ๊ณ ๋„ ํ•จ ์•”์„ธํฌ์˜ ์„ฑ์žฅ, ๋ถ„ํ™” ๋ฐ ์ƒ์กด์— ์žˆ์–ด ์‹ ํ˜ธ์ „๋‹ฌ๊ฒฝ๋กœ์˜ ํ™œ์„ฑํ™”๊ฐ€ ์ค‘์š”ํ•œ ์—ญํ• ์„ ํ•˜๋Š”๋ฐ, ์ด ๊ฒฝ๋กœ๋ฅผ ํ™œ์„ฑํ™”์‹œํ‚ค๋Š” ์ค‘์š”ํ•œ ๋งค๊ฐœ ํšจ์†Œ๋“ค์ธ ํ‹ฐ๋กœ์‹  ํ‚ค๋‚˜์ œ, ํ”„๋กœํ…Œ์ธ ํ‚ค๋‚˜์ œ ๋“ฑ์˜ ํ™œ์„ฑ์„ ์–ต์ œํ•˜๋Š” ํ‘œ์  ์น˜๋ฃŒ์ œ Small molecule: ์ƒ๋ฌผํ•™์  ํ‘œ์ (๋‹จ๋ฐฑ์งˆ or ํ•ต์‚ฐ)๊ณผ ๊ฒฐํ•ฉํ•ด ์„ธํฌ ์‹ ํ˜ธ์ „๋‹ฌ ๋“ฑ ํ‘œ์ ์˜ ํ™œ๋™ ๋˜๋Š” ๊ธฐ๋Šฅ์„ ๋ณ€ํ™”์‹œํ‚ด, effector(์ž‘์šฉ์ธ์ž)๋กœ์„œ์˜ ์—ญํ•  ๊ฐ€๋Šฅ Kinase ํ‚ค๋‚˜์•„์ œ, ํ‚ค๋„ค์ด์Šค, ์ธ์‚ฐํ™”ํšจ์†Œ ATP: ์„ธํฌ ๋‚ด์˜ ํ™”ํ, ์—๋„ˆ์ง€๊ฐ€ ๋ณ€ํ™˜๋œ ํ˜•ํƒœ → ATP๋Š” ๋‹จ๋ฐฑ์งˆ์˜ ์ธ์‚ฐํ™” ๊ณผ์ •์„ ๊ฑฐ์ณ ์„ธํฌ ๋‚ด์˜ ์‹ ์ง„๋Œ€์‚ฌ ์กฐ์ ˆ ATP์™€ ๊ฐ™์€ ๊ณ ์—๋„ˆ์ง€ ๋ถ„์ž์˜ ์ธ์‚ฐ๊ธฐ๋ฅผ ํŠน..

Bioinfomatics 2021.02.09

[Data Analysis] ๋ฐ์ดํ„ฐ ๋ถ„์„ ๊ณผ์ •, ์ „์ฒ˜๋ฆฌ์˜ ์ค‘์š”์„ฑ

๋ฐ์ดํ„ฐ ๋ถ„์„ ๊ณผ์ •(Data Analysis Process) 1. Goal Definition ๊ฐ๊ด€์ , ๊ตฌ์ฒด์ ์œผ๋กœ ๋ถ„์„ ๋Œ€์ƒ ์ •์˜(=๋ฌธ์ œ ์ •์˜) ํ•ด๋‹น ๋„๋ฉ”์ธ์— ๋Œ€ํ•œ ์ดํ•ด ํ•ด๋‹น ํ”„๋กœ์ ํŠธ์— ๋Œ€ํ•œ ์ดํ•ด 2. Data Searching & Collecting ๋ฌธ์ œ ์ •์˜ ํ›„ ํ•„์š”ํ•œ ๋ฐ์ดํ„ฐ ๊ฒ€์ƒ‰ ๋ฐ์ดํ„ฐ ์ˆ˜์ง‘ ๋ฐ ๋ฐ์ดํ„ฐ ํŒŒ์•… 3. Data Preparation ๋ฐ์ดํ„ฐ์˜ noise๋ฅผ ์ œ๊ฑฐํ•˜๊ณ  ์›ํ•˜๋Š” ํ˜•ํƒœ๋กœ ๋ฐ์ดํ„ฐ๋ฅผ ๋ณ€ํ™˜ํ•˜๋Š” Data preprocessing(๋ฐ์ดํ„ฐ ์ „์ฒ˜๋ฆฌ ๊ณผ์ •)ํฌํ•จ ์ตœ์ข… ๋ชจ๋ธ์„ ๋งŒ๋“ค๊ธฐ ์œ„ํ•œ ๋ฐ์ดํ„ฐ ์ค€๋น„ ๋‹จ๊ณ„ ๊ด€๋ จ ๋ฐ์ดํ„ฐ๋ผ๋ฆฌ ๊ด€๊ณ„ ์„ค์ • ๋ฐ ๋ฐ์ดํ„ฐ ์ดํ•ด, ๋ฐ์ดํ„ฐ ๋ณ‘ํ•ฉ 4. Modeling ์–ด๋–ป๊ฒŒ ๋ชจ๋ธ ์„ค๊ณ„ํ• ์ง€ ๊ตฌ์„ฑ R, Python ๋“ฑ ์ด์šฉํ•ด ๋จธ์‹ ๋Ÿฌ๋‹ ์•Œ๊ณ ๋ฆฌ์ฆ˜ ๋“ฑ ๋‹ค์–‘ํ•œ ์•Œ๊ณ ๋ฆฌ์ฆ˜ ์ ์šฉ 5. Evaluatio..

[Deep Learning] ๋”ฅ๋Ÿฌ๋‹/๋จธ์‹ ๋Ÿฌ๋‹/์ธ๊ณต์ง€๋Šฅ์˜ ์ฐจ์ด, ์ธ๊ณต์‹ ๊ฒฝ๋ง ๊ฐœ๋…

๋”ฅ๋Ÿฌ๋‹์— ๋Œ€ํ•ด ์ดํ•ดํ•˜๋ ค๋ฉด ๋จผ์ € ์ธ๊ณต์ง€๋Šฅ, ๋จธ์‹ ๋Ÿฌ๋‹, ๋”ฅ๋Ÿฌ๋‹์˜ ์ฐจ์ด์ ์„ ์•Œ์•„์•ผํ•œ๋‹ค. ์ธ๊ณต์ง€๋Šฅ(AI): ์‚ฌ๋žŒ์˜ ์ง€๋Šฅ์„ ๋ชจ๋ฐฉํ•ด ์‚ฌ๋žŒ์ด ํ•˜๋Š” ๋ณต์žกํ•œ ์ผ์„ ํ•  ์ˆ˜ ์žˆ๋Š” ๊ธฐ๊ณ„๋ฅผ ๋งŒ๋“œ๋Š” ๊ฒƒ ๋จธ์‹ ๋Ÿฌ๋‹(ML): ์ž…๋ ฅ๋˜์–ด ์žˆ๋Š” ๋ฐ์ดํ„ฐ๋ฅผ ํ†ตํ•ด ๊ฐ๊ฐ์˜ ์ƒํ™ฉ์— ๋งž๋„๋ก ํ•™์Šต์‹œํ‚ค๋Š” ๊ฒƒ ๋”ฅ๋Ÿฌ๋‹(DL): ๋จธ์‹ ๋Ÿฌ๋‹์œผ๋กœ ํ•™์Šตํ•œ ๋ถ€๋ถ„๋“ค์„ ๊ธฐ๋ฐ˜์œผ๋กœ ์Šค์Šค๋กœ ํŒ๋‹จํ•ด ์ƒˆ๋กญ๊ฒŒ ๋Œ€์ฒ˜ํ•˜๋Š” ๊ฒƒ (=end-to-end machine learning) ๋”ฅ๋Ÿฌ๋‹์ด end-to-end machine learning์ธ ์ด์œ ๋Š” ์ฒ˜์Œ๋ถ€ํ„ฐ ๋๊นŒ์ง€ ์ปดํ“จํ„ฐ๊ฐ€ ํ•™์Šตํ•˜๋Š” ๊ฒƒ์œผ๋กœ, ๋จธ์‹ ๋Ÿฌ๋‹์ฒ˜๋Ÿผ ์‚ฌ๋žŒ์ด ๋ฐ์ดํ„ฐ์—์„œ ์ผ๋ถ€ ํŠน์ง•์„ ๋ฝ‘์•„์„œ ๊ธฐ๊ณ„์—๊ฒŒ ์ „๋‹ฌํ•ด ํ•™์Šต์‹œํ‚ค๋Š” ๊ฒƒ์ด ์•„๋‹ˆ๋ผ ๋ฐ์ดํ„ฐ ์ž์ฒด๋ฅผ ์ปดํ“จํ„ฐ์— ์ „๋‹ฌํ•˜๋Š” ๋“ฑ ์‚ฌ๋žŒ์˜ ๊ฐœ์ž…์ด ์•„์˜ˆ ์—†๊ธฐ ๋•Œ๋ฌธ์ด๋‹ค. ์ธ๊ณต์ง€๋Šฅ, ๋จธ์‹ ๋Ÿฌ๋‹, ๋”ฅ๋Ÿฌ๋‹์˜ ์ •์˜๋ฅผ ..

siRNA, RNAi, off-target effect

RNAi(RNA interference) siRNA(short interfering RNA)๋ผ ๋ถˆ๋ฆฌ๋Š” 12~21 mer์˜ dsRNA์— ์˜ํ•ด ์„œ์—ด ํŠน์ด์ ์œผ๋กœ ์œ ์ „์ž ๋ฐœํ˜„์ด ์–ต์ œ๋˜๋Š” ํ˜„์ƒ --> RNA ๊ฐ„์„ญ gene silencing by RNAi RNA ๊ฐ„์„ญ์„ ์ด์šฉํ•ด ํŠน์ • ์œ ์ „์ž์˜ ํ™œ์„ฑ์„ ์–ต์ œํ•  ์ˆ˜ ์žˆ์Œ ํ‘œ์  mRNA์™€ ์ƒ๋ณด์  ๊ด€๊ณ„์— ์žˆ๋Š” ์ด์ค‘๊ฐ€๋‹ฅ RNA ๋ฅผ ์„ธํฌ์— ๋„์ž…ํ•˜๋Š” ๋ฐฉ๋ฒ•์œผ๋กœ ์–ต์ œ ๊ฐ€๋Šฅ ๋‹จ์ : ํšจ๊ณผ๊ฐ€ ์ผ์‹œ์ ์ผ ์ˆ˜ ์žˆ์œผ๋ฉฐ, ๋‹ค๋ฅธ ์œ ์ „์ž ๋ฐœํ˜„๋„ ์–ต์ œํ•  ์ˆ˜ ์žˆ์Œ siRNA(short interfering RNA) off-target effect ์ค„์—ฌ์„œ design ํ•ด์•ผํ•จ Off-target effect siRNA๋ฅผ ์ด์šฉํ•œ RNAi์˜ ๋ถ€์ž‘์šฉ, ๋‹ค๋ฅธ ์œ ์ „์ž ๋ฐœํ˜„๋„ ์–ต์ œ๋˜๋Š” ํ˜„์ƒ https://www.ibri..

Bioinfomatics 2021.02.03
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